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16S V3-V5 Library Preparation Kit for Illumina

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Detail

Overview

  • Protocol optimized for DNA isolated from a diversity of samples including stool, soil, water, saliva, plant, urine, skin, and more
  • Simple and quick workflow: library could be prepared in less than 5 hours
  • Component of Norgen’s metagenomics workflow
  • A single NGS run can be prepared with up to 384 unique dual-index libraries

Sample type purification kit guide 

The 16S V3-V5 Library Preparation Kit for Illumina consists of the reagents and components required for library preparation of the 16S V3-V4 amplicon libraries to be used for next-generation sequencing on Illumina platforms. All molecular reagents including primers, enzyme mixes, indexes, and buffers are provided. Instructions for PCR clean up with the AMPure XP Magnetic Beads (supplied by customer) are also included for rapid purification of nucleic acid products generated at two steps of the workflow. The library prep workflow could be used for purified DNA inputs from different sources including stool, soil, water, saliva, plant, urine, skin swab, vaginal swab, cheek swab, nasal swab, plasma/serum, tongue swab, gum swab, and others.

The 16S V3-V5 Library Preparation Kit for Illumina has a streamlined procedure that reduces the handling time such that the library prep procedure can be completed in approximately 4 hours (see diagram below). Input DNA is first subjected to targeted PCR to amplify the V3-V4 region of the DNA encoding 16S rRNA. The post-PCR reaction is then cleaned up using AMPure XP beads. Dual index primers are then added using a limited-cycle PCR. The indexed amplicons flanked by 5′ and 3′ barcoded adaptors are then cleaned using AMPure XP beads. The libraries are then ready for quantification, pooling and sequencing.16S Library Prep

Details

Supporting Data

Figure 1 / 3

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Figure 1: 16S V3-V5 PCR1 Amplification
Figure 1: 16S V3-V5 PCR1 Amplification
Figure 2: 16S V3-V5 Indexed Libraries
Figure 3: BioAnalyzer Trace of the 16S V3-V5 Indexed Library

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Minimum amount of starting material:2.5 µL of DNA (5 ng/µL)
Time to complete library preparation:4 hours

Storage Conditions and Product Stability
Norgen’s 16S V3-V5Library Prep Kit for Illumina is shipped as one kit box (for the 24 prep kit) or two sub-component kits (for the 96 prep kit). All kits should be stored at -20°C upon arrival.

All kit components should remain stable for at least 1 year when stored at the specified storage conditions.

StepComponentCat. 70500 (24 preps)Cat. 70510, 70520, 70530, 70540 (96 preps)
Amplicon PCR (PCR 1)MGX Master Mix330 µL1,320 µL
16S V3-V5 Primer Mix70 µL280 µL
Index PCR (PCR 2)Indexing Master Mix660 µL2 x 1,320 µL
N7xx Index Primer50 µL50 µL
S5xx Index Primer70 µL70 µL
PCR Clean-UpResuspension Buffer2 x 1,250 µL2 x 5,000 µL
Nuclease-free water1,250 µL1 x 6,000 µL

Other Products

PreviousNext[DM3260] FluoroBand™ 1 KB Plus (0.1-10 kb) Fluorescent DNA Ladder, 500 μlPreviousNext

Description 

The DM3260 FluoroBand™ 1 KB Plus (0.1-10 kb) Fluorescent DNA Ladder is a ready-to-use DNA ladder, which is pre-mixed with high sensitivity DNA binding fluorescent dye and loading dye for direct gel loading. The DNA Ladder DM3260 is composed of 19 individual DNA fragments: 10k, 8k, 6k, 5k, 4k, 3k, 2.5k, 2k, 1.5k, 1k, 900, 800, 700, 600, 500, 400, 300, 200, and 100 base pairs derived from a mixture of PCR products and specifically digested plasmid DNA; these bands can be visualized when illuminated with 470 nm blue light or UV light. This product contains three enhanced bands (3 kb, 1.5 kb and 500 bp) for easier reference. In addition, three tracking dyes, Xylene cyanol FF, Bromophenol blue and Orange G which mimic the migration of 4,000 bp, 500 bp and 50 bp dsDNA during electrophoresis are also added for real time monitoring. Real time observation of the electrophoresis is also possible if compatible light source is fitted to the electrophoresis tank. 

Features

  • Sharp bands
  • Quick reference— enhanced bands 
  • Ready-to-use— premixed with loading dye for direct loading
  • Stable— room temperature storage over 6 months
  • Directly observed by UV or blue light— premixed with high sensitive DNA fluorescent dye

Source 

Phenol extracted PCR products and dsDNA digested with specific restriction enzymes, equilibrated in 10 mM Tris-HCl (pH 8.0) and 10 mM EDTA.

Range 

100 ~ 10,000 bp 

Concentration 

87 µg/ 500 µl  

Recommended loading volume 

5 µl/ well

Storage

Protected from light 
Room temperature for 6 months
4°C for 12 months 
-20°C for 24 months 

Human Immunodeficiency Virus Type 1

Description

Nucleic acid testing (NAT) is the method of choice for detection and quantification of a wide range of micro organisms. Primerdesign manufactures and supplies high quality quantitative real-time PCR kits for the detection and simultaneous quantification of numerous significant pathogens . A copy number standard curve is provided for quantification and an the internal extraction template (DNA or RNA), controls for the quality of the nucleic acid extraction and eliminates false negative results.

The kit is designed with the broadest possible detection profile to ensure that all clinically relevant strains and subtypes are detected. Target sequences are selected by working with data from key opinion leaders in the field. Multiple sequence alignments and unprecedented real-time PCR expertise in design and validation ensure the best possible kit. Details of the target and priming specificity are included in the individual handbooks above.

Packaged, optimised and ready to use. Expect Better Data.

Plant/Fungi DNA Isolation Kits

Overview

  • Rapid and simple procedure
  • Excellent quality and yield of DNA
  • Process a broad spectrum of plant species and filamentous fungi
  • Isolate total DNA including pathogen DNA without phenol 
  • Available in spin column format and 96-well format for high throughput applications

These kits provide a rapid method for the isolation and purification of total DNA from a wide range of plant and fungal species. Total DNA, including genomic DNA, mitochondrial DNA and chloroplast DNA can be purified from fresh or frozen plant tissues, plant cells or fungi samples using this kit. Purified DNA samples can be used for the detection of viral pathogens, as viral DNA is isolated with the plant/fungi DNA. The purified DNA is of the highest integrity, and can be used in a number of downstream applications including PCR, qPCR, SNP, Southern blotting and sequencing.

Plant/Fungi DNA Isolation Kit (Spin Column)

Complete 10 purifications in 45 minutes. This kit offers a maximum loading volume of 650 μL per column, and a maximum binding capacity of 50 μg per column.

Plant/Fungi DNA Isolation 96-Well Kit (High Throughput)

For high throughput applications. Purification with the 96-well plates can be integrated with a robotic automation system. Complete 96 purifications in 50 minutes. This kit offers a maximum loading volume of 500 μL per well, and a maximum binding capacity of 50 μg per well.

Plant/Fungi DNA Isolation Kit (Magnetic Bead System)

The DNA is bound to the surface of the magnetic beads under optimized buffer conditions and released using a low salt buffer system. The Plant DNA Isolation Kit (Magnetic Bead System) can be easily adapted to automated magnetic bead separation instruments and work stations.

Plant/Fungi DNA Isolation 96-Well Kit (High Throughput Magnetic Bead System)

For high throughput applications. Purification with the 96-well plates can be integrated with a robotic automation system.

Details

Supporting Data

Figure 1 / 7

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Figure 1.  Isolate DNA from a Wide Range of Plants
Figure 1.  Isolate DNA from a Wide Range of Plants
Figure 2.  High Quality DNA
Figure 3. DNA isolated from four different plant species
Figure 4. High DNA Quality (A260/280)
Figure 5. High Plant DNA Quality
Figure 6. DNA Isolated From Plant Tissue
Figure 5. High DNA Quality Confirmed By Real-time PCR

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Kit Specifications – Spin Column
Column Binding Capacity50 μg
Maximum Column Loading Volume650 μL
Maximum Amount of Starting Material:Plant TissuesFungi (wet weight)100 mg
100 mg
Average Yields*
50 mg Tomato Leaves
50 mg Grape Leaves
50 mg Peach Leaves
50 mg Plum Leaves
50 mg Pine Needles
Botrytis cinerea (50 mg wet weight)
Fusarium sp. (50 mg wet weight)
Aspergillus niger (50 mg wet weight)
18 µg
10 µg
10 µg
10 µg
5 µg
1.5 µg
2 µg
4 µg
Time to Complete 10 Purifications 45 minutes

* Average yields will vary depending upon a number of factors including species, growth conditions used and developmental stage.
 

* Average yields will vary depending upon a number of factors including species, growth conditions used and developmental stage. 

Storage Conditions and Product Stability
All solutions should be kept tightly sealed and stored at room temperature, except for the RNAse which should be stored at -20°C. This kit is stable for 1 year after the date of shipment.

Select Plants and Fungi that can be used with the Plant/Fungi DNA Purification Kits

PlantsPlants (Cont’d)Fungi
TomatoTurnipAspergillus niger
GrapeChinese CabbageMucor racemosus
PeachRadishCladosporium cladosporioides
PlumKomatsunaFusarium oxysporum
Pine NeedlesApricotPenicillium sp.
RaspberrySweet PotatoBotrytis cinerea (Botryotinia fuckeliana)
StrawberryHydrangeaPichia sp.
LegumesFigRhizopus oryzae
Prosopis cineraria (Ghaf)TurfAlternaria tenuissima
Sorghum grassCherryFusarium sp.
TobaccoSaintpaulia 
ArabidopsisLotus 
LichenCarrot 
Corn seedHansen 
Sunflower seedPistachio 
Olive seed  
Soybean seed  
ComponentCat. 26200 (50 preps)Cat. 26250 (250 preps)Cat. 26900 (192 preps)Cat. 58200 (50 preps)Cat. 62400 (192 preps)
Lysis Buffer L30 mL1 x 30 mL
2 x 60 mL
2 x 60 mL60 mL2 x 60 mL
Binding Buffer I7 mL1 x 7 mL
1 x 25 mL
25 mL7 mL25 mL
Solution WN18 mL1 x 18 mL
1 x 55 mL
55 mL18 mL55 mL
Wash Solution A38 mL2 x 38 mL2 x 38 mL
Elution Buffer B15 mL30 mL30 mL8 mL30 mL
RNAse A1 vial (80 μL)5 vials (5 x 80 μL)1 vial1 vial1 vial
Magnetic Bead Suspension4 x 1.1 mL2 x 8.5 mL
Filter Columns50250
Spin Columns50250
Collection Tubes100500
96-Well Plate22
96-Well Collection Plate2
Adhesive Tape42
Elution Tubes (1.7 mL)5025050
96-Well Elution Plate22
Product Insert11111